Generate man with updated roxygen

6 files changed, 77 insertions, 18 deletions

diff --git a/man/gensvm.Rd b/man/gensvm.Rd
index 18bcd52..9058f54 100644
--- a/man/gensvm.Rd
+++ b/man/gensvm.Rd
@@ -4,10 +4,24 @@
 \alias{gensvm}
 \title{Fit the GenSVM model}
 \usage{
-gensvm(x, y, p = 1, lambda = 1e-08, kappa = 0, epsilon = 1e-06,
-  weights = "unit", kernel = "linear", gamma = "auto", coef = 1,
-  degree = 2, kernel.eigen.cutoff = 1e-08, verbose = FALSE,
-  random.seed = NULL, max.iter = 1e+08, seed.V = NULL)
+gensvm(
+  x,
+  y,
+  p = 1,
+  lambda = 1e-08,
+  kappa = 0,
+  epsilon = 1e-06,
+  weights = "unit",
+  kernel = "linear",
+  gamma = "auto",
+  coef = 1,
+  degree = 2,
+  kernel.eigen.cutoff = 1e-08,
+  verbose = FALSE,
+  random.seed = NULL,
+  max.iter = 1e+08,
+  seed.V = NULL
+)
 }
 \arguments{
 \item{x}{data matrix with the predictors. \cr\cr
diff --git a/man/gensvm.grid.Rd b/man/gensvm.grid.Rd
index 0d15f9a..abcf00d 100644
--- a/man/gensvm.grid.Rd
+++ b/man/gensvm.grid.Rd
@@ -4,8 +4,16 @@
 \alias{gensvm.grid}
 \title{Cross-validated grid search for GenSVM}
 \usage{
-gensvm.grid(x, y, param.grid = "tiny", refit = TRUE, scoring = NULL,
-  cv = 3, verbose = 0, return.train.score = TRUE)
+gensvm.grid(
+  x,
+  y,
+  param.grid = "tiny",
+  refit = TRUE,
+  scoring = NULL,
+  cv = 3,
+  verbose = 0,
+  return.train.score = TRUE
+)
 }
 \arguments{
 \item{x}{training data matrix. We denote the size of this matrix by 
diff --git a/man/gensvm.refit.Rd b/man/gensvm.refit.Rd
index 07af08f..d5086c3 100644
--- a/man/gensvm.refit.Rd
+++ b/man/gensvm.refit.Rd
@@ -4,10 +4,24 @@
 \alias{gensvm.refit}
 \title{Train an already fitted model on new data}
 \usage{
-gensvm.refit(fit, x, y, p = NULL, lambda = NULL, kappa = NULL,
-  epsilon = NULL, weights = NULL, kernel = NULL, gamma = NULL,
-  coef = NULL, degree = NULL, kernel.eigen.cutoff = NULL,
-  max.iter = NULL, verbose = NULL, random.seed = NULL)
+gensvm.refit(
+  fit,
+  x,
+  y,
+  p = NULL,
+  lambda = NULL,
+  kappa = NULL,
+  epsilon = NULL,
+  weights = NULL,
+  kernel = NULL,
+  gamma = NULL,
+  coef = NULL,
+  degree = NULL,
+  kernel.eigen.cutoff = NULL,
+  max.iter = NULL,
+  verbose = NULL,
+  random.seed = NULL
+)
 }
 \arguments{
 \item{fit}{Fitted \code{gensvm} object}
diff --git a/man/gensvm.train.test.split.Rd b/man/gensvm.train.test.split.Rd
index 2a38099..38c0420 100644
--- a/man/gensvm.train.test.split.Rd
+++ b/man/gensvm.train.test.split.Rd
@@ -4,9 +4,15 @@
 \alias{gensvm.train.test.split}
 \title{Create a train/test split of a dataset}
 \usage{
-gensvm.train.test.split(x, y = NULL, train.size = NULL,
-  test.size = NULL, shuffle = TRUE, random.state = NULL,
-  return.idx = FALSE)
+gensvm.train.test.split(
+  x,
+  y = NULL,
+  train.size = NULL,
+  test.size = NULL,
+  shuffle = TRUE,
+  random.state = NULL,
+  return.idx = FALSE
+)
 }
 \arguments{
 \item{x}{array to split}
diff --git a/man/gensvm.validate.params.Rd b/man/gensvm.validate.params.Rd
index ca6ddab..4776356 100644
--- a/man/gensvm.validate.params.Rd
+++ b/man/gensvm.validate.params.Rd
@@ -4,8 +4,16 @@
 \alias{gensvm.validate.params}
 \title{[internal] Validate parameters}
 \usage{
-gensvm.validate.params(p = NULL, kappa = NULL, lambda = NULL,
-  epsilon = NULL, gamma = NULL, weights = NULL, kernel = NULL, ...)
+gensvm.validate.params(
+  p = NULL,
+  kappa = NULL,
+  lambda = NULL,
+  epsilon = NULL,
+  gamma = NULL,
+  weights = NULL,
+  kernel = NULL,
+  ...
+)
 }
 \value{
 TRUE if all values pass their respective conditions, FALSE 
diff --git a/man/plot.gensvm.Rd b/man/plot.gensvm.Rd
index dc4ca38..6f9b949 100644
--- a/man/plot.gensvm.Rd
+++ b/man/plot.gensvm.Rd
@@ -4,9 +4,18 @@
 \alias{plot.gensvm}
 \title{Plot the simplex space of the fitted GenSVM model}
 \usage{
-\method{plot}{gensvm}(x, labels, newdata = NULL, with.margins = TRUE,
-  with.shading = TRUE, with.legend = TRUE, center.plot = TRUE,
-  xlim = NULL, ylim = NULL, ...)
+\method{plot}{gensvm}(
+  x,
+  labels,
+  newdata = NULL,
+  with.margins = TRUE,
+  with.shading = TRUE,
+  with.legend = TRUE,
+  center.plot = TRUE,
+  xlim = NULL,
+  ylim = NULL,
+  ...
+)
 }
 \arguments{
 \item{x}{A fitted \code{gensvm} object}