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authorGertjan van den Burg <gertjanvandenburg@gmail.com>2018-02-28 16:24:40 +0000
committerGertjan van den Burg <gertjanvandenburg@gmail.com>2018-02-28 16:24:40 +0000
commitd0838d5f643f930b3c5504582d8506747db74cc7 (patch)
treee5a3a4c22401cfd675d2e13d63218d29ac6c8185 /gensvm
parentadd autofunctions to git (diff)
downloadpygensvm-d0838d5f643f930b3c5504582d8506747db74cc7.tar.gz
pygensvm-d0838d5f643f930b3c5504582d8506747db74cc7.zip
fix for average fit_time in grid search
Diffstat (limited to 'gensvm')
-rw-r--r--gensvm/__init__.py2
-rw-r--r--gensvm/gridsearch.py9
2 files changed, 9 insertions, 2 deletions
diff --git a/gensvm/__init__.py b/gensvm/__init__.py
index c1244ce..712da42 100644
--- a/gensvm/__init__.py
+++ b/gensvm/__init__.py
@@ -1,6 +1,6 @@
# -*- coding: utf-8 -*-
-__version__ = '0.1.6'
+__version__ = '0.1.7'
from .core import GenSVM
from .gridsearch import GenSVMGridSearchCV
diff --git a/gensvm/gridsearch.py b/gensvm/gridsearch.py
index a241d8a..e49d3ce 100644
--- a/gensvm/gridsearch.py
+++ b/gensvm/gridsearch.py
@@ -155,7 +155,14 @@ def _format_results(results, cv_idx, true_y, scorers, iid,
if return_n_test_samples:
ret.append(len(y_test))
if return_times:
- fit_time = duration
+ # Note, the C library returns the duration for a task (i.e. all
+ # splits). The _skkl_format_cv_results() computes the mean of
+ # the values, which should represent the average time per
+ # split. To compute this correctly, we here divide by the
+ # number of splits. Since we calculate the mean later, the mean
+ # is still correct, but this is not the exact fit_time for this
+ # fold.
+ fit_time = duration / n_splits
ret.extend([fit_time, score_time])
if return_parameters:
ret.append(param)