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| author | Gertjan van den Burg <gertjanvandenburg@gmail.com> | 2017-10-06 16:44:11 +0200 |
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| committer | Gertjan van den Burg <gertjanvandenburg@gmail.com> | 2017-10-06 16:44:11 +0200 |
| commit | ba0225b7ab0556b2019935d5f5786863c0a01e6a (patch) | |
| tree | 42c89e4d5d863f8498c1efa9cd5d25da0e240480 /gensvm/pyx_gensvm.pxd | |
| download | pygensvm-ba0225b7ab0556b2019935d5f5786863c0a01e6a.tar.gz pygensvm-ba0225b7ab0556b2019935d5f5786863c0a01e6a.zip | |
initial commit
Diffstat (limited to 'gensvm/pyx_gensvm.pxd')
| -rw-r--r-- | gensvm/pyx_gensvm.pxd | 91 |
1 files changed, 91 insertions, 0 deletions
diff --git a/gensvm/pyx_gensvm.pxd b/gensvm/pyx_gensvm.pxd new file mode 100644 index 0000000..be4d5f5 --- /dev/null +++ b/gensvm/pyx_gensvm.pxd @@ -0,0 +1,91 @@ +cimport numpy as np + +# Includes + +cdef extern from "gensvm_globals.h": + # Stuff for kerneltype + ctypedef enum KernelType: + pass + +cdef extern from "gensvm_sparse.h": + # stuff for GenSparse + + cdef struct GenSparse: + long nnz + long n_row + long n_col + double *values + long *ia + long *ja + + GenSparse *gensvm_init_sparse() + void gensvm_free_sparse(GenSparse *) + + +cdef extern from "gensvm_base.h": + + cdef struct GenData: + long K + long n + long m + long r + long *y + double *Z + GenSparse *spZ + double *RAW + double *Sigma + KernelType kerneltype + double *kernelparam + + cdef struct GenModel: + int weight_idx + long K + long n + long m + double epsilon + double p + double kappa + double lmd + double *V + double *Vbar + double *U + double *UU + double *Q + double *H + double *rho + double training_error + KernelType kerneltype + double *kernelparam + double kernel_eigen_cutoff + + GenModel *gensvm_init_model() + void gensvm_free_model(GenModel *) + + GenData *gensvm_init_data() + void gensvm_free_data(GenData *) + +cdef extern from "gensvm_train.h": + + void gensvm_train(GenModel *, GenData *, GenModel *) nogil + +cdef extern from "gensvm_sv.h": + + long gensvm_num_sv(GenModel *) + +cdef extern from "gensvm_helper.c": + + ctypedef char* char_const_ptr "char const *" + void set_model(GenModel *, double, double, double, double, int, int, + double, double, double, double, long, long) + void set_data(GenData *, char *, char *, np.npy_intp *, long) + char_const_ptr check_model(GenModel *) + void copy_V(void *, GenModel *) + long get_iter_count(GenModel *) + double get_training_error(GenModel *) + int get_status(GenModel *) + long get_n(GenModel *) + long get_m(GenModel *) + long get_K(GenModel *) + void free_data(GenData *) + void set_verbosity(int) + void gensvm_predict(char *, char *, long, long, long, char *) nogil |
