1 files changed, 0 insertions, 180 deletions
diff --git a/src/GenSVMpred.c b/src/GenSVMpred.c
deleted file mode 100644
index 57680b1..0000000
--- a/src/GenSVMpred.c
+++ /dev/null
@@ -1,180 +0,0 @@
-/*
- * 20140317:
- * THIS FUNCTION IS DEPRECATED, SINCE IT DOES NOT WORK WITH KERNELS.
- *
- */
-
-/**
- * @file GenSVM_pred.c
- * @author Gertjan van den Burg
- * @date January, 2014
- * @brief Command line interface for predicting class labels
- *
- * @details
- * This is a command line program for predicting the class labels or
- * determining the predictive performance of a pre-determined model on a given
- * test dataset. The predictive performance can be written to the screen or
- * the predicted class labels can be written to a specified output file. This
- * is done using gensvm_write_predictions().
- *
- * The specified model file must follow the specification given in
- * gensvm_write_model().
- *
- * For usage information, see the program help function.
- *
- */
-
-#include "gensvm.h"
-#include "gensvm_init.h"
-#include "gensvm_io.h"
-#include "gensvm_pred.h"
-#include "gensvm_util.h"
-
-#define MINARGS 3
-
-extern FILE *GENSVM_OUTPUT_FILE;
-
-// function declarations
-void exit_with_help();
-void parse_command_line(int argc, char **argv,
-		char *input_filename, char *output_filename,
-		char *model_filename);
-
-/**
- * @brief Help function
- */
-void exit_with_help()
-{
-	printf("This is GenSVM, version %1.1f\n\n", VERSION);
-	printf("Usage: predGenSVM [options] test_data_file model_file\n");
-	printf("Options:\n");
-	printf("-o output_file : write output to file\n");
-	printf("-q : quiet mode (no output)\n");
-	exit(0);
-}
-
-/**
- * @brief Main interface function for predGenSVM
- *
- * @details
- * Main interface for the command line program. A given model file is read and
- * a test dataset is initialized from the given data. The predictive
- * performance (hitrate) of the model on the test set is printed to the output
- * stream (default = stdout). If an output file is specified the predictions
- * are written to the file.
- *
- * @todo
- * Ensure that the program can read model files without class labels
- * specified. In that case no prediction accuracy is printed to the screen.
- *
- * @param[in] 	argc 	number of command line arguments
- * @param[in] 	argv 	array of command line arguments
- *
- */
-int main(int argc, char **argv)
-{
-	long *predy;
-	double performance;
-
-	char input_filename[MAX_LINE_LENGTH];
-	char model_filename[MAX_LINE_LENGTH];
-	char output_filename[MAX_LINE_LENGTH];;
-
-	if (argc < MINARGS || gensvm_check_argv(argc, argv, "-help")
-			|| gensvm_check_argv_eq(argc, argv, "-h") )
-		exit_with_help();
-	parse_command_line(argc, argv, input_filename, output_filename,
-			model_filename);
-
-	// read the data and model
-	struct GenModel *model = gensvm_init_model();
-	struct GenData *data = gensvm_init_data();
-	gensvm_read_data(data, input_filename);
-	gensvm_read_model(model, model_filename);
-
-	// check if the number of attributes in data equals that in model
-	if (data->m != model->m) {
-		fprintf(stderr, "Error: number of attributes in data (%li) "
-				"does not equal the number of attributes in "
-				"model (%li)\n", data->m, model->m);
-		exit(1);
-	} else if (data->K != model->K) {
-		fprintf(stderr, "Error: number of classes in data (%li) "
-				"does not equal the number of classes in "
-				"model (%li)\n", data->K, model->K);
-		exit(1);
-	}
-
-	// predict labels and performance if test data has labels
-	predy = Calloc(long, data->n);
-	gensvm_predict_labels(data, model, predy);
-	if (data->y != NULL) {
-		performance = gensvm_prediction_perf(data, predy);
-		note("Predictive performance: %3.2f%%\n", performance);
-	}
-
-	// if output file is specified, write predictions to it
-	if (gensvm_check_argv_eq(argc, argv, "-o")) {
-		gensvm_write_predictions(data, predy, output_filename);
-		note("Predictions written to: %s\n", output_filename);
-	}
-
-	// free the model, data, and predictions
-	gensvm_free_model(model);
-	gensvm_free_data(data);
-	free(predy);
-
-	return 0;
-}
-
-/**
- * @brief Parse command line arguments
- *
- * @details
- * Read the data filename and model filename from the command line arguments.
- * If specified, also read the output filename. If the quiet flag is given,
- * set the global output stream to NULL. On error, exit_with_help().
- *
- * @param[in] 	argc 			number of command line arguments
- * @param[in] 	argv 			array of command line arguments
- * @param[in] 	input_filename 		pre-allocated array for the input
- * 					filename
- * @param[in] 	output_filename 	pre-allocated array for the output
- * 					filename
- * @param[in] 	model_filename 		pre-allocated array for the model
- * 					filename
- *
- */
-void parse_command_line(int argc, char **argv, char *input_filename,
-		char *output_filename, char *model_filename)
-{
-	int i;
-
-	GENSVM_OUTPUT_FILE = stdout;
-
-	for (i=1; i<argc; i++) {
-		if (argv[i][0] != '-') break;
-		if (++i >= argc)
-			exit_with_help();
-		switch (argv[i-1][1]) {
-			case 'o':
-				strcpy(output_filename, argv[i]);
-				break;
-			case 'q':
-				GENSVM_OUTPUT_FILE = NULL;
-				i--;
-				break;
-			default:
-				fprintf(stderr, "Unknown option: -%c\n",
-						argv[i-1][1]);
-				exit_with_help();
-		}
-	}
-
-	if (i >= argc)
-		exit_with_help();
-
-	strcpy(input_filename, argv[i]);
-	i++;
-	strcpy(model_filename, argv[i]);
-}