% Generated by roxygen2 (4.1.1): do not edit by hand
% Please edit documentation in R/sparsestep.R
\name{sparsestep}
\alias{sparsestep}
\title{Fits the SparseStep model}
\usage{
sparsestep(x, y, lambda = c(0.1, 0.5, 1, 5, 10), gamma0 = 1000,
  gammastop = 1e-04, IMsteps = 2, gammastep = 2, normalize = TRUE,
  intercept = TRUE, force.zero = TRUE, threshold = 1e-07, XX = NULL,
  Xy = NULL, use.XX = TRUE, use.Xy = TRUE)
}
\arguments{
\item{x}{matrix of predictors}

\item{y}{response}

\item{lambda}{regularization parameter}

\item{gamma0}{starting value of the gamma parameter}

\item{gammastop}{stopping value of the gamma parameter}

\item{IMsteps}{number of steps of the majorization algorithm to perform for
each value of gamma}

\item{gammastep}{factor to decrease gamma with at each step}

\item{normalize}{if TRUE, each variable is standardized to have unit L2
norm, otherwise it is left alone.}

\item{intercept}{if TRUE, an intercept is included in the model (and not
penalized), otherwise no intercept is included}

\item{force.zero}{if TRUE, absolute coefficients smaller than the provided
threshold value are set to absolute zero as a post-processing step,
otherwise no thresholding is performed}

\item{threshold}{threshold value to use for setting coefficients to
absolute zero}

\item{XX}{The X'X matrix; useful for repeated runs where X'X stays the same}

\item{Xy}{The X'y matrix; useful for repeated runs where X'y stays the same}

\item{use.XX}{whether or not to compute X'X and return it}

\item{use.Xy}{whether or not to compute X'y and return it}
}
\value{
A "sparsestep" S3 object is returned, for which print, predict,
coef, and plot methods exist. It has the following items:
\item{call}{The call that was used to construct the model.}
\item{lambda}{The value(s) of lambda used to construct the model.}
\item{gamma0}{The gamma0 value of the model.}
\item{gammastop}{The gammastop value of the model}
\item{IMsteps}{The IMsteps value of the model}
\item{gammastep}{The gammastep value of the model}
\item{intercept}{Boolean indicating if an intercept was fitted in the
model}
\item{force.zero}{Boolean indicating if a force zero-setting was
performed.}
\item{threshold}{The threshold used for a forced zero-setting}
\item{beta}{The resulting coefficients stored in a sparse matrix format
(dgCMatrix). This matrix has dimensions nvar x nlambda}
\item{a0}{The intercept vector for each value of gamma of length nlambda}
\item{normx}{Vector used to normalize the columns of x}
\item{meanx}{Vector of column means of x}
\item{XX}{The matrix X'X if use.XX was set to TRUE}
\item{Xy}{The matrix X'y if use.Xy was set to TRUE}
}
\description{
Fits the SparseStep model for a single value of the
regularization parameter.
}
\examples{
x <- matrix(rnorm(100*20), 100, 20)
y <- rnorm(100)
fit <- sparsestep(x, y)

}
\author{
Gerrit J.J. van den Burg, Patrick J.F. Groenen, Andreas Alfons\cr
Maintainer: Gerrit J.J. van den Burg <gertjanvandenburg@gmail.com>
}
\references{
Van den Burg, G.J.J., Groenen, P.J.F. and Alfons, A. (2017).
 \emph{SparseStep: Approximating the Counting Norm for Sparse Regularization},
 arXiv preprint arXiv:1701.06967 [stat.ME]. 
 URL \url{https://arxiv.org/abs/1701.06967}.
}
\seealso{
\code{\link{coef}}, \code{\link{print}}, \code{\link{predict}},
\code{\link{plot}}, and \code{\link{path.sparsestep}}.
}