#include "util.h" #include "matrix.h" /* Read the data from the data_file. The data matrix X is augmented with a column of ones, to get the matrix Z. */ void read_data(struct Data *dataset, char *data_file) { FILE *fid; long i, j; long n, m; // dimensions of data long nr = 0; // used to check consistency of data double value; long K = 0; long min_y = 1000; char buf[MAX_LINE_LENGTH]; if ((fid = fopen(data_file, "r")) == NULL) { printf("\nERROR: datafile %s could not be opened.\n", data_file); exit(0); } // Read data dimensions nr += fscanf(fid, "%ld", &n); nr += fscanf(fid, "%ld", &m); // Allocate memory dataset->Z = Malloc(double, n*(m+1)); // Read first line of data for (j=1; jZ, n, 0, j, value); } // Check if there is a label at the end of the line if (fgets(buf, MAX_LINE_LENGTH, fid) == NULL) { printf("ERROR: No label found on first line.\n"); exit(1); } if (sscanf(buf, "%lf", &value) > 0) { dataset->y = Malloc(long, n); dataset->y[0] = value; } else if (dataset->y != NULL) { free(dataset->y); dataset->y = NULL; } // Read the rest of the file for (i=1; iZ, m+1, i, j, value); } if (dataset->y != NULL) { nr += fscanf(fid, "%lf", &value); dataset->y[i] = (long) value; K = maximum(K, value); min_y = minimum(min_y, value); } } fclose(fid); // Correct labels: must be in [1, K] if (min_y == 0) { for (i=0; iy[i]++; } else if (min_y < 0 ) { printf("ERROR: wrong class labels in %s, minimum value is: %ld\n", data_file, min_y); exit(0); } if (nr < n * m) { printf("ERROR: not enough data found in %s\n", data_file); exit(0); } // Set the column of ones for (i=0; iZ, m+1, i, 0, 1.0); dataset->n = n; dataset->m = m; dataset->K = K; info("Succesfully read data file: %s\n", data_file); } void next_line(FILE *fid, char *filename) { char buffer[MAX_LINE_LENGTH]; if (fgets(buffer, MAX_LINE_LENGTH, fid) == NULL) { fprintf(stderr, "Error reading file %s\n", filename); exit(1); } } double get_fmt_double(FILE *fid, char *filename, const char *fmt) { char buffer[MAX_LINE_LENGTH]; double value; if (fgets(buffer, MAX_LINE_LENGTH, fid) == NULL) { fprintf(stderr, "Error reading line from file %s\n", filename); exit(1); } sscanf(buffer, fmt, &value); return value; } long get_fmt_long(FILE *fid, char *filename, const char *fmt) { char buffer[MAX_LINE_LENGTH]; long value; if (fgets(buffer, MAX_LINE_LENGTH, fid) == NULL) { fprintf(stderr, "Error reading line from file %s\n", filename); exit(1); } sscanf(buffer, fmt, &value); return value; } void read_model(struct Model *model, char *model_filename) { long i, j, nr = 0; FILE *fid; char buffer[MAX_LINE_LENGTH]; char data_filename[MAX_LINE_LENGTH]; double value = 0; fid = fopen(model_filename, "r"); if (fid == NULL) { fprintf(stderr, "Error opening model file %s\n", model_filename); exit(1); } // skip the first four lines for (i=0; i<4; i++) next_line(fid, model_filename); // read all model variables model->p = get_fmt_double(fid, model_filename, "p = %lf"); model->lambda = get_fmt_double(fid, model_filename, "lambda = %lf"); model->kappa = get_fmt_double(fid, model_filename, "kappa = %lf"); model->epsilon = get_fmt_double(fid, model_filename, "epsilon = %lf"); model->weight_idx = (int) get_fmt_long(fid, model_filename, "weight_idx = %li"); // skip to data section for (i=0; i<2; i++) next_line(fid, model_filename); // read filename of data file if (fgets(buffer, MAX_LINE_LENGTH, fid) == NULL) { fprintf(stderr, "Error reading model file %s\n", model_filename); exit(1); } sscanf(buffer, "filename = %s\n", data_filename); model->data_file = data_filename; // read all data variables model->n = get_fmt_long(fid, model_filename, "n = %li\n"); model->m = get_fmt_long(fid, model_filename, "m = %li\n"); model->K = get_fmt_long(fid, model_filename, "K = %li\n"); // skip to output for (i=0; i<2; i++) next_line(fid, model_filename); // read the matrix V and check for consistency model->V = Malloc(double, (model->m+1)*(model->K-1)); for (i=0; im+1; i++) { for (j=0; jK-1; j++) { nr += fscanf(fid, "%lf ", &value); matrix_set(model->V, model->K-1, i, j, value); } } if (nr != (model->m+1)*(model->K-1)) { fprintf(stderr, "Error reading model file %s. " "Not enough elements of V found.\n", model_filename); exit(1); } } void write_model(struct Model *model, char *output_filename) { FILE *fid; int i, j, diff, hours, minutes; char timestr[1000]; time_t current_time, lt, gt; struct tm *lclt; // open output file fid = fopen(output_filename, "w"); if (fid == NULL) { fprintf(stderr, "Error opening output file %s", output_filename); exit(1); } // get current time (in epoch) current_time = time(NULL); if (current_time == ((time_t)-1)) { fprintf(stderr, "Failed to compute the current time.\n"); exit(1); } // convert time to local time and create a string lclt = localtime(¤t_time); strftime(timestr, 1000, "%c", lclt); if (timestr == NULL) { fprintf(stderr, "Failed to convert time to string.\n"); exit(1); } // calculate the difference from UTC including DST lt = mktime(localtime(¤t_time)); gt = mktime(gmtime(¤t_time)); diff = -difftime(gt, lt); hours = (diff/3600); minutes = (diff%3600)/60; if (lclt->tm_isdst == 1) hours++; // Write output to file fprintf(fid, "Output file for MSVMMaj (version %1.1f)\n", VERSION); fprintf(fid, "Generated on: %s (UTC %+03i:%02i)\n\n", timestr, hours, minutes); fprintf(fid, "Model:\n"); fprintf(fid, "p = %15.16f\n", model->p); fprintf(fid, "lambda = %15.16f\n", model->lambda); fprintf(fid, "kappa = %15.16f\n", model->kappa); fprintf(fid, "epsilon = %g\n", model->epsilon); fprintf(fid, "weight_idx = %i\n", model->weight_idx); fprintf(fid, "\n"); fprintf(fid, "Data:\n"); fprintf(fid, "filename = %s\n", model->data_file); fprintf(fid, "n = %li\n", model->n); fprintf(fid, "m = %li\n", model->m); fprintf(fid, "K = %li\n", model->K); fprintf(fid, "\n"); fprintf(fid, "Output:\n"); for (i=0; im+1; i++) { for (j=0; jK-1; j++) { fprintf(fid, "%+15.16f ", matrix_get(model->V, model->K-1, i, j)); } fprintf(fid, "\n"); } fclose(fid); } void write_predictions(struct Data *data, long *predy, char *output_filename) { } int check_argv(int argc, char **argv, char *str) { int i; int arg_str = 0; for (i=1; in; long m = model->m; long K = model->K; model->W = Calloc(double, m*(K-1)); if (model->W == NULL) { fprintf(stderr, "Failed to allocate memory for W.\n"); exit(1); } model->t = Calloc(double, K-1); if (model->t == NULL) { fprintf(stderr, "Failed to allocate memory for t.\n"); exit(1); } model->V = Calloc(double, (m+1)*(K-1)); if (model->V == NULL) { fprintf(stderr, "Failed to allocate memory for V.\n"); exit(1); } model->Vbar = Calloc(double, (m+1)*(K-1)); if (model->Vbar == NULL) { fprintf(stderr, "Failed to allocate memory for Vbar.\n"); exit(1); } model->U = Calloc(double, K*(K-1)); if (model->U == NULL) { fprintf(stderr, "Failed to allocate memory for U.\n"); exit(1); } model->UU = Calloc(double, n*K*(K-1)); if (model->UU == NULL) { fprintf(stderr, "Failed to allocate memory for UU.\n"); exit(1); } model->Q = Calloc(double, n*K); if (model->Q == NULL) { fprintf(stderr, "Failed to allocate memory for Q.\n"); exit(1); } model->H = Calloc(double, n*K); if (model->H == NULL) { fprintf(stderr, "Failed to allocate memory for H.\n"); exit(1); } model->R = Calloc(double, n*K); if (model->R == NULL) { fprintf(stderr, "Failed to allocate memory for R.\n"); exit(1); } model->rho = Calloc(double, n); if (model->rho == NULL) { fprintf(stderr, "Failed to allocate memory for rho.\n"); exit(1); } } void free_model(struct Model *model) { free(model->W); free(model->t); free(model->V); free(model->Vbar); free(model->U); free(model->UU); free(model->Q); free(model->H); free(model->rho); free(model->R); free(model); } void free_data(struct Data *data) { free(data->Z); free(data->y); free(data); } /* void print_matrix(double *M, long rows, long cols) { long i, j; for (i=0; i